1. Berg D, Clemente JC, Colombel JF. Can inflammatory bowel disease be permanently treated with short-term interventions on the microbiome?. Expert Rev Gastroenterol Hepatol. 2015;9(6):781-95. [
DOI:10.1586/17474124.2015.1013031] [
PMID]
2. Wright EK, Kamm MA, Teo SM, Inouye M, Wagner J, Kirkwood CD. Recent advances in characterizing the gastrointestinal microbiome in Crohn's disease: a systematic review. Inflammatory Bowel Dis. 2015;21(6):1219-28. [
DOI:10.1097/MIB.0000000000000382] [
PMID] [
PMCID]
3. Shen N, Clemente JC. Engineering the microbiome: a novel approach to immunotherapy for allergic and immune diseases. Curr Allergy Asthma Rep. 2015;15:1-10. [
DOI:10.1007/s11882-015-0538-9] [
PMID]
4. Haag LM, Siegmund B. Intestinal microbiota and the innate immune system-a crosstalk in Crohn's disease pathogenesis. Front Immunol. 2015;6:489. [
DOI:10.3389/fimmu.2015.00489]
5. Lane ER, Zisman TL, Suskind DL. The microbiota in inflammatory bowel disease: current and therapeutic insights. J Inflamm Res. 2017;10:63-73. [
DOI:10.2147/JIR.S116088] [
PMID] [
PMCID]
6. Chu H. Host gene-microbiome interactions: molecular mechanisms in inflammatory bowel disease. Genome Med. 2017;9(1):69. [
DOI:10.1186/s13073-017-0459-4] [
PMID] [
PMCID]
7. Kang S, Denman SE, Morrison M, Yu Z, Dore J, Leclerc M, et al. Dysbiosis of fecal microbiota in Crohn's disease patients as revealed by a custom phylogenetic microarray. Inflammatory Bowel Dis. 2010;16(12):2034-42. [
DOI:10.1002/ibd.21319] [
PMID]
8. Estevinho MM, Yuan Y, Rodríguez-Lago I, Sousa-Pimenta M, Dias CC, Barreiro-de Acosta M, et al. Efficacy and safety of probiotics in IBD: An overview of systematic reviews and updated meta-analysis of randomized controlled trials. United Eur Gastroenterol J. 2024;12(7):960-81. [
DOI:10.1002/ueg2.12636] [
PMID] [
PMCID]
9. Xu M, Zhang W, Lin B, Lei Y, Zhang Y, Zhang Y, et al. Efficacy of probiotic supplementation and impact on fecal microbiota in patients with inflammatory bowel disease: a systematic review and meta-analysis of randomized controlled trials. Nutr Rev. 2025;83(2):e65-e73. [
DOI:10.1093/nutrit/nuae022] [
PMID]
10. Zhang XF, Guan XX, Tang YJ, Sun JF, Wang XK, Wang WD, et al. Clinical effects and gut microbiota changes of using probiotics, prebiotics or synbiotics in inflammatory bowel disease: a systematic review and meta-analysis. Eur J Nutr. 2021;60(5):2855-75. [
DOI:10.1007/s00394-021-02503-5] [
PMID]
11. Öztürk O, Kocaman R, Kanbach DK. How to design bibliometric research: an overview and a framework proposal. Rev Manag Sci. 2024;18(11):3333-61. [
DOI:10.1007/s11846-024-00738-0]
12. Frontiers Media SA. History of Frontiers. Lausanne: Frontiers Media SA; [cited 2025 Oct 20]. Available from: [
https://www.frontiersin.org/about/history]
13. MDPI. History of Nutrients. Basel: MDPI; [cited 2025 Oct 20]. Available from: [
https://www.mdpi.com/journal/nutrients/history]
14. Oxford University Press. Inflammatory Bowel Diseases - Volume 1, Issue 1. New York: Oxford University Press; [cited 2025 Oct 20]. Available from: [
https://academic.oup.com/ibdjournal/issue/1/1]
15. MDPI. History of International Journal of Molecular Sciences [Internet]. Basel: MDPI; [cited 2025 Oct 20]. Available from: [
https://www.mdpi.com/journal/ijms/history]
16. Clarivate Analytics. Institutions leading IBD and probiotics research: Bibliometric analysis. Web of Science; [cited 2024 March 07]. Available from: [
https://www.webofscience.com/wos/woscc/summary/303c5908-7a5a-4877-bbdd-4b9c4bd99287-d2722d80/relevan]
17. Frank DN, Amand AL, Feldman RA, Boedeker EC, Harpaz N, Pace NR. Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci. 2007;104(34):13780-5. [
DOI:10.1073/pnas.0706625104] [
PMID] [
PMCID]
18. Hansen R, Russell RK, Reiff C, Louis P, McIntosh F, Berry S, et al. Microbiota of de-novo pediatric IBD: increased Faecalibacterium prausnitzii and reduced bacterial diversity in Crohn's but not in ulcerative colitis. The Am J Gastroenterol. 2012;107(12):1913-22. [
DOI:10.1038/ajg.2012.335] [
PMID]
19. Swidsinski A, Dörffel Y, Loening-Baucke V, Gille C, Göktas Ö, Reißhauer A, et al. Reduced mass and diversity of the colonic microbiome in patients with multiple sclerosis and their improvement with ketogenic diet. Front Microbiol. 2017;8:1141. [
DOI:10.3389/fmicb.2017.01141] [
PMID] [
PMCID]
20. Moayyedi P, Surette MG, Kim PT, Libertucci J, Wolfe M, Onischi C, et al. Fecal microbiota transplantation induces remission in patients with active ulcerative colitis in a randomized controlled trial. Gastroenterology. 2015;149(1):102-9. [
DOI:10.1053/j.gastro.2015.04.001] [
PMID]
21. Kruis W, Schütz E, Fric P, Fixa B, Judmaier G, Stolte M. Double‐blind comparison of an oral Escherichia coli preparation and mesalazine in maintaining remission of ulcerative colitis. Aliment Pharmacol Ther. 1997;11(5):853-8. [
DOI:10.1046/j.1365-2036.1997.00225.x] [
PMID]
22. Sokol H, Pigneur B, Watterlot L, Lakhdari O, Bermúdez-Humarán LG, Gratadoux JJ, et al. Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc Natl Acad Sci U S A. 2008;105(43):16731-6. [
DOI:10.1073/pnas.0804812105] [
PMID] [
PMCID]
23. Gevers D, Kugathasan S, Denson LA, Vázquez-Baeza Y, Treuren WV, Ren B, et al. The treatment-naive microbiome in new-onset Crohn's disease. Cell Host & Microbe. 2014;15(3):382-92. [
DOI:10.1016/j.chom.2014.02.005] [
PMID] [
PMCID]
24. Morgan XC, Kabakchiev B, Waldron L, Tyler AD, Tickle TL, Milgrom R, et al. Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease. Genome Biol. 2015;16(1):67. [
DOI:10.1186/s13059-015-0637-x] [
PMID] [
PMCID]
25. Sartor RB, Wu GD. Roles for intestinal bacteria, viruses, and fungi in pathogenesis of inflammatory bowel diseases and therapeutic approaches. Gastroenterology. 2017;152(2):327-39. [
DOI:10.1053/j.gastro.2016.10.012] [
PMID] [
PMCID]
26. Gionchetti P, Dignass A, Danese S, Magro Dias FJ, Rogler G, Lakatos PL, et al. 3rd European evidence-based consensus on the diagnosis and management of Crohn's disease 2016: part 2: surgical management and special situations. J Crohn's Colitis. 2017;11(2):135-49. [
DOI:10.1093/ecco-jcc/jjw169] [
PMID]
27. Guslandi M. Role of probiotics in Crohn's disease and in pouchitis. J Clin Gastroenterol. 2015;49:S46-9. [
DOI:10.1097/MCG.0000000000000351] [
PMID]
28. Prantera C, Scribano ML, Falasco G, Andreoli A, Luzi C. Ineffectiveness of probiotics in preventing recurrence after curative resection for Crohn's disease: a randomised controlled trial with Lactobacillus GG. Gut. 2002;51(3):405-9. [
DOI:10.1136/gut.51.3.405] [
PMID] [
PMCID]
29. Khan I, Ullah N, Zha L, Bai Y, Khan A, Zhao T, et al. Alteration of gut microbiota in inflammatory bowel disease (IBD): cause or consequence? IBD treatment targeting the gut microbiome. Pathogens. 2019;8(3):126. [
DOI:10.3390/pathogens8030126] [
PMID] [
PMCID]
30. Zuo T, Ng SC. The gut microbiota in the pathogenesis and therapeutics of inflammatory bowel disease. Front Microbiol. 2018;9:2247. [
DOI:10.3389/fmicb.2018.02247] [
PMID] [
PMCID]
31. Nishida A, Inoue R, Inatomi O, Bamba S, Naito Y, Andoh A. Gut microbiota in the pathogenesis of inflammatory bowel disease. Clin J Gastroenterol. 2018;11(1):1-10. [
DOI:10.1007/s12328-017-0813-5] [
PMID]
32. Matsuoka K, Kanai T. The gut microbiota and inflammatory bowel disease. InSeminars in immunopathology. 2015 Jan (Vol. 37, No. 1, pp. 47-55). Berlin, Heidelberg, Germany: Springer. [
DOI:10.1007/s00281-014-0454-4] [
PMID] [
PMCID]
33. Hold GL, Smith M, Grange C, Watt ER, El-Omar EM, Mukhopadhya I. Role of the gut microbiota in inflammatory bowel disease pathogenesis: what have we learnt in the past 10 years?. World J Gastroenterol. 2014;20(5):1192. [
DOI:10.3748/wjg.v20.i5.1192] [
PMID] [
PMCID]
34. Eom T, Kim YS, Choi CH, Sadowsky MJ, Unno T. Current understanding of microbiota-and dietary-therapies for treating inflammatory bowel disease. J Microbiol. 2018;56(3):189-98. [
DOI:10.1007/s12275-018-8049-8] [
PMID]
35. Abraham BP, Quigley EM. Probiotics in inflammatory bowel disease. Gastroenterol Clin. 2017;46(4):769-82. [
DOI:10.1016/j.gtc.2017.08.003] [
PMID]
36. Wasilewski A, Zielińska M, Storr M, Fichna J. Beneficial effects of probiotics, prebiotics, synbiotics, and psychobiotics in inflammatory bowel disease. Inflammatory Bowel Dis. 2015;21(7):1674-82. [
DOI:10.1097/MIB.0000000000000364] [
PMID]
37. Hu Y, Chen Z, Xu C, Kan S, Chen D. Disturbances of the gut microbiota and microbiota-derived metabolites in inflammatory bowel disease. Nutrients. 2022;14(23):5140. [
DOI:10.3390/nu14235140] [
PMID] [
PMCID]
38. Li J, Butcher J, Mack D, Stintzi A. Functional impacts of the intestinal microbiome in the pathogenesis of inflammatory bowel disease. Inflammatory Bowel Dis. 2015;21(1):139-53. [
DOI:10.1097/MIB.0000000000000215] [
PMID]
39. Bjarnason I, Sission G. A randomised, double-blind, placebo-controlled trial of a multi-strain probiotic in patients with asymptomatic ulcerative colitis and Crohn’s disease. Inflammopharmacology. 2019;27(3):465. [
DOI:10.1007/s10787-019-00595-4] [
PMID] [
PMCID]
40. Xu P, Lv T, Dong S, Cui Z, Luo X, Jia B, et al. Association between intestinal microbiome and inflammatory bowel disease: Insights from bibliometric analysis. Comput Struct Biotechnol J. 2022;20:1716-25. [
DOI:10.1016/j.csbj.2022.04.006] [
PMID] [
PMCID]
41. Zhang T, Zhang B, Tian W, Wang F, Zhang J, Ma X, et al. Research trends in ulcerative colitis: A bibliometric and visualized study from 2011 to 2021. Frontiers in Pharmacology. 2022;13:951004. [
DOI:10.3389/fphar.2022.951004] [
PMID] [
PMCID]
42. Zhang A, Wang F, Li D, Wang CZ, Yao H, Wan JY, et al. Emerging insights into inflammatory bowel disease from the intestinal microbiota perspective: a bibliometric analysis. Front Immunol. 2023;14:1264705. [
DOI:10.3389/fimmu.2023.1264705] [
PMID] [
PMCID]