1. Hassan RA, Abotaleb ST, Hamed HB, Eldeen MS. Antioxidant and antimicrobial activities of Melissa officinalis L.(lemon balm) extracts. J Agric Chem Biotechnol. 2019;10(9):183-7. [
DOI:10.21608/jacb.2019.56823]
2. Petrisor G, Motelica L, Craciun LN, Oprea OC, Ficai D, Ficai A. Melissa officinalis: Composition, pharmacological effects and derived release systems-A review. Int J Mol Sci. 2022;23(7):3591. [
DOI:10.3390/ijms23073591] [
PMID] [
PMCID]
3. Abdel-Naime WA, Fahim JR, Fouad MA, Kamel MS. Antibacterial, antifungal, and GC-MS studies of Melissa officinalis. S Afr J Bot. 2019;124:228-34. [
DOI:10.1016/j.sajb.2019.05.011]
4. Abdel-Naime WA, Fahim JR, Abdelmohsen UR, Fouad MA, Al-Footy KO, Abdel-Lateff AA, et al. New antimicrobial triterpene glycosides from lemon balm (Melissa officinalis). S Afr J Bot. 2019;125:161-7. [
DOI:10.1016/j.sajb.2019.07.004]
5. Yamaguchi T. Antibacterial effect of the combination of terpenoids. Arch Microbiol. 2022;204(8):520. [
DOI:10.1007/s00203-022-03142-y] [
PMID]
6. Chaudhari R, Singh K, Kodgire P. Biochemical and molecular mechanisms of antibiotic resistance in Salmonella spp. Res Microbiol. 2023;174(1-2):103985. [
DOI:10.1016/j.resmic.2022.103985] [
PMID]
7. Tooke CL, Hinchliffe P, Bragginton EC, Colenso CK, Hirvonen VH, Takebayashi Y, et al. β-Lactamases and β-Lactamase Inhibitors in the 21st Century. J Mol Biol. 2019;431(18):3472-500. [
DOI:10.1016/j.jmb.2019.04.002] [
PMID] [
PMCID]
8. Jacobs LM, Consol P, Chen Y. Drug discovery in the field of β-lactams: an academic perspective. Antibiotics. 2024;13(1):59. [
DOI:10.3390/antibiotics13010059] [
PMID] [
PMCID]
9. Jakubovics NS, Goodman SD, Mashburn‐Warren L, Stafford GP, Cieplik F. The dental plaque biofilm matrix. Periodontol 2000. 2021;86(1):32-56. [
DOI:10.1111/prd.12361] [
PMID] [
PMCID]
10. Lamont RJ, Koo H, Hajishengallis G. The oral microbiota: dynamic communities and host interactions. Nat Rev Microbiol. 2018;16(12):745-59. [
DOI:10.1038/s41579-018-0089-x] [
PMID] [
PMCID]
11. Rajasekaran JJ, Krishnamurthy HK, Bosco J, Jayaraman V, Krishna K, Wang T, et al. Oral microbiome: a review of its impact on oral and systemic health. Microorganisms. 2024;12(9):1797. [
DOI:10.3390/microorganisms12091797] [
PMID] [
PMCID]
12. Valm AM. The structure of dental plaque microbial communities in the transition from health to dental caries and periodontal disease. J Mol Biol. 2019;431(16):2957-69. [
DOI:10.1016/j.jmb.2019.05.016] [
PMID] [
PMCID]
13. Iauk L, Lo Bue AM, Milazzo I, Rapisarda A, Blandino G. Antibacterial activity of medicinal plant extracts against periodontopathic bacteria. Phytother Res. 2003;17(6):599-604. [
DOI:10.1002/ptr.1188] [
PMID]
14. Tzimas K, Antoniadou M, Varzakas T, Voidarou C. Plant-derived compounds: A promising tool for dental caries prevention. Curr Issues Mol Biol. 2024;46(6):5257-90. [
DOI:10.3390/cimb46060315] [
PMID] [
PMCID]
15. Vos P, Garrity G, Jones D, Krieg NR, Ludwig W, Rainey FA, et al. Bergey's manual of systematic bacteriology: Volume 3. New York: Springer New York; 2009.
16. Bauer AW, Kirby WM, Sherris JC, Turck M. Antibiotic susceptibility testing by a standardized single disk method. Am J Clin Pathol. 1966;45(4_ts):493-6. [
DOI:10.1093/ajcp/45.4_ts.493] [
PMID]
17. Drago L, Mombelli B, Ciardo G, Vecchi ED, Gismondo MR. Effects of three different fish Oil7 formulations on Helicobacter pylori growth and viability: in vitro study. J Chemother. 1999;11(3):207-10. [
DOI:10.1179/joc.1999.11.3.207] [
PMID]
18. Mukherjee PK, Kakali Saha KS, Giri SN, Pal M, Saha BP. Antifungal screening of Nelumbo nucifera (Nymphaeaceae) rhizome extract. Indian J Microbiol. 1995;35(4):327-30.
19. Swift ML. GraphPad prism, data analysis, and scientific graphing. J Chem Inf Comput Sci. 1997;37(2):411-2. [
DOI:10.1021/ci960402j] [
PMCID]
20. Miles RS, Amyes SGB. Laboratory control of antimicrobial therapy. In: Collee JG, Fraser AG, Marmion BP, Simmons A, editors. Mackie and McCartney practical medical microbiology. 14th ed. 1996. p. 151-78. New York, U.S.A: Churchill Livingstone.
21. Ericsson HM, Sherris JC. Antibiotic sensitivity testing. Report of an international collaborative study. Acta Pathol Microbiol Scand B Microbiol Immunol. 1971;217(Suppl):1-90.
22. Clinical and Laboratory Standards Institute. Methods for dilution antimicrobial susceptibility tests for bacteria that grow aerobically; approved standard. 7th ed M7-A7. CLSI, Wayne PA: NCCLS; 2006.
23. Hall T, Biosciences I, Carlsbad CJ. BioEdit: an important software for molecular biology. GERF bull biosci. 2011;2(1):60-1.
24. Jumper J, Evans R, Pritzel A, Green T, Figurnov M, Ronneberger O, et al. Highly accurate protein structure prediction with AlphaFold. Nature. 2021;596(7873):583-9. [
DOI:10.1038/s41586-021-03819-2] [
PMID] [
PMCID]
25. Laskowski RA, MacArthur MW, Moss DS, Thornton JM. PROCHECK: a program to check the stereochemical quality of protein structures. Appl Crystallogr. 1993;26(2):283-91. [
DOI:10.1107/S0021889892009944]
26. Colovos C, Yeates TO. Verification of protein structures: patterns of nonbonded atomic interactions. Protein Sci. 1993;2(9):1511-9. [
DOI:10.1002/pro.5560020916] [
PMID] [
PMCID]
27. Eisenberg D, Lüthy R, Bowie JU. [20] VERIFY3D: assessment of protein models with three-dimensional profiles. InMethods in enzymology 1997 Jan 1 (Vol. 277, pp. 396-404). Academic Press. [
DOI:10.1016/S0076-6879(97)77022-8] [
PMID]
28. Heo L, Park H, Seok C. GalaxyRefine: Protein structure refinement driven by side-chain repacking. Nucleic Acids Res. 2013;41(W1):W384-8. [
DOI:10.1093/nar/gkt458] [
PMID] [
PMCID]
29. Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, et al. UCSF Chimera-a visualization system for exploratory research and analysis. J Comput Chem. 2004;25(13):1605-12. [
DOI:10.1002/jcc.20084] [
PMID]
30. Trott O, Olson AJ. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J Comput Chem. 2010;31(2):455-61. [
DOI:10.1002/jcc.21334] [
PMID] [
PMCID]
31. Morris GM, Huey R, Lindstrom W, Sanner MF, Belew RK, Goodsell DS, et al. AutoDock4 and AutoDockTools4: automated docking with selective receptor flexibility. J Comput Chem. 2009;30(16):2785-91. [
DOI:10.1002/jcc.21256] [
PMID] [
PMCID]
32. DeLano WL. PyMOL: an open-source molecular graphics tool. CCP4 Newsl Protein Crystallogr. 2002;40(1):82-92.
33. BIOVIA, Dassault Systèmes. Discovery Studio Modeling Environment, Release 2017. San Diego: Dassault Systèmes; 2016.
34. AL-Salihi SS, Karim GF, Al-Bayati A, Obaid HM. Prevalence of Methicillin-Resistant and Methicillin Sensitive Staphylococcus aureus Nasal Carriage and their Antibiotic Resistant Patterns in Kirkuk City, Iraq. J Pure Appl Microbiol. 2023;17(1):329-37. [
DOI:10.22207/JPAM.17.1.22]
35. Darweesh O, Kurdi A, Merkhan M, Ahmed H, Ibrahem S, Al-Zidan RN, et al. Knowledge, attitudes, and practices of Iraqi parents regarding antibiotic use in children and the implications. Antibiotics. 2025;14(4):376. [
DOI:10.3390/antibiotics14040376] [
PMID] [
PMCID]
36. Saleem Z, Mekonnen BA, Orubu ES, Islam MA, Nguyen TT, Ubaka CM, et al. Current access, availability and use of antibiotics in primary care among key low-and middle-income countries and the policy implications. Expert Rev Anti Infect Ther. 2026;24(6):545-86. [Updated by Publisher of IJMM] [
DOI:10.1080/14787210.2025.2477198] [
PMID]
37. Atiyea QM, Al-najar FM, Karim GF, AL-Salihi SS. Molecular Evaluation of the Impact of Nd: YAG Laser and Static Magnetic Field on Genomic DNA of Some Bacterial Isolates using RAPD-PCR. J Pure Appl Microbiol. 2022;16(3):2072-82. [
DOI:10.22207/JPAM.16.3.62]
38. Karim GF, AL-Salihi SS, Atya QM, Abass KS. Aerobic and anaerobic bacteria in tonsils of different ages with recurrent tonsillitis. Indian J Public Health Res Dev. 2019;10(9):132-6. [
DOI:10.5958/0976-5506.2019.02507.5]
39. Araujo Junior AG, Costa ML, Silva FR, Arcanjo DD, Moura LF, Oliveira FA, et al. Amoxicillin-resistant streptococci carriage in the mouths of children: a systematic review and meta-analysis. Pathogens. 2022;11(10):1114. [
DOI:10.3390/pathogens11101114] [
PMID] [
PMCID]
40. Awlqadr FH, Altemimi AB, Qadir SA, Mohammed OA, Saeed MN, Hesarinejad MA, et al. Bioactive Compounds, Medicinal Benefits, and Contemporary Extraction Methods for Lemon Balm (Melissa officinalis). Food Sci Nutr. 2025;13(9):e70864. [
DOI:10.1002/fsn3.70864] [
PMID] [
PMCID]
41. Frazão VP, Hufnagel MT, Dörr F, Pessoa AF, Demarque DP. The extraction method determines the chemical differences between the stem and leaf of Melissa officinalis L. Metabolites. 2024;14(5):248. [
DOI:10.21203/rs.3.rs-4238016/v1]
42. Wang CM, Jhan YL, Tsai SJ, Chou CH. The pleiotropic antibacterial mechanisms of ursolic acid against methicillin-resistant Staphylococcus aureus (MRSA). Molecules. 2016;21(7):884. [
DOI:10.3390/molecules21070884] [
PMID] [
PMCID]
43. Sycz Z, Tichaczek-Goska D, Wojnicz D. Anti-planktonic and anti-biofilm properties of pentacyclic triterpenes-asiatic acid and ursolic acid as promising antibacterial future pharmaceuticals. Biomolecules. 2022;12(1):98. [
DOI:10.3390/biom12010098] [
PMID] [
PMCID]
44. Ghiulai R, Avram S, Stoian D, Pavel IZ, Coricovac D, Oprean C, et al. Lemon balm extracts prevent breast cancer progression in vitro and in ovo on chorioallantoic membrane assay. Evid Based Complement Alternat Med. 2020;2020(1):6489159. [
DOI:10.1155/2020/6489159] [
PMID] [
PMCID]
45. Park SN, Ahn SJ, Kook JK. Oleanolic acid and ursolic acid inhibit peptidoglycan biosynthesis in Streptococcus mutans UA159. Braz J Microbiol. 2015;46:613-7. [
DOI:10.1590/S1517-838246246220130209] [
PMID] [
PMCID]
46. Lyu X, Wang L, Shui Y, Jiang Q, Chen L, Yang W, et al. Ursolic acid inhibits multi-species biofilms developed by Streptococcus mutans, Streptococcus sanguinis, and Streptococcus gordonii. Arch Oral Biol. 2021;125:105107. [
DOI:10.1016/j.archoralbio.2021.105107] [
PMID]
47. Shalaby MA, Dokla EM, Serya RA, Abouzid KA. Penicillin binding protein 2a: An overview and a medicinal chemistry perspective. Eur J Med Chem. 2020;199:112312. [
DOI:10.1016/j.ejmech.2020.112312] [
PMID]
48. Flanders PL, Contreras-Martel C, Brown NW, Shirley JD, Martins A, Nauta KN, et al. Combined structural analysis and molecular dynamics reveal penicillin-binding protein inhibition mode with β-lactones. ACS Chem Biol. 2022; 17(11):3110-20. [
DOI:10.1021/acschembio.2c00503] [
PMID] [
PMCID]
49. Bhadola P, Deo N. Exploring complexity of class-A Beta-lactamase family using physiochemical-based multiplex networks. Sci Rep. 2023;13(1):20626. [
DOI:10.1038/s41598-023-48128-y] [
PMID] [
PMCID]
50. Wang F, Zhou H, Wang X, Tao P. Dynamical behavior of β-lactamases and penicillin-binding proteins in different functional states and its potential role in evolution. Entropy. 2019;21(11):1130. [
DOI:10.3390/e21111130] [
PMCID]
51. Tooke CL, Hinchliffe P, Bragginton EC, Colenso CK, Hirvonen VH, Takebayashi Y, et al. β-Lactamases and β-Lactamase Inhibitors in the 21st Century. J Mol Biol. 2019;431(18):3472-500. [
DOI:10.1016/j.jmb.2019.04.002] [
PMID] [
PMCID]
52. Sternke M, Tripp KW, Barrick D. The use of consensus sequence information to engineer stability and activity in proteins. InMethods in enzymology 2020 Jan 1 (Vol. 643, pp. 149-179). Academic Press. [
DOI:10.1016/bs.mie.2020.06.001] [
PMID] [
PMCID]
53. Alwaili MA, Aba Alkhayl FF, Rudayni HA, Allam AA, Altoom NG, Lamsabhi AM, et al. Unraveling molecular mechanisms of β-glucuronidase inhibition by flavonoids from Centaurea scoparia: integrated in silico and in vitro insights. New J Chem. 2024;48(32):14236-52. [
DOI:10.1039/D4NJ02393E]
54. Vaidyanathan R, Sreedevi SM, Ravichandran K, Vinod SM, Krishnan YH, Babu LK, et al. Molecular docking approach on the binding stability of derivatives of phenolic acids (DPAs) with Human Serum Albumin (HSA): hydrogen-bonding versus hydrophobic interactions or combined influences?. JCIS Open. 2023;12:100096. [
DOI:10.1016/j.jciso.2023.100096]
55. Seo S, Choi J, Park S, Ahn J. Binding affinity prediction for protein-ligand complex using deep attention mechanism based on intermolecular interactions. BMC Bioinform. 2021;22(1):542. [
DOI:10.1186/s12859-021-04466-0] [
PMID] [
PMCID]
56. Nwokebu GC, Adesina AB, Isibor CN, Aigbepue SA, Egbo CC, Pureaziba N, et al. Identification of phytochemicals with inhibitory potential against beta-lactamase enzymes via computer-aided approach. Bioorg Chem. 2024;145:107238. [
DOI:10.1016/j.bioorg.2024.107238] [
PMID]
57. Bertonha AF, Silva CC, Shirakawa KT, Trindade DM, Dessen A. Penicillin-binding protein (PBP) inhibitor development: A 10-year chemical perspective. Exp Biol Med. 2023;248(19):1657-70. [
DOI:10.1177/15353702231208407] [
PMID] [
PMCID]
58. Huang YS, Zhou H. Breakthrough advances in beta-lactamase inhibitors: New synthesized compounds and mechanisms of action against drug-resistant bacteria. Pharmaceuticals. 2025;18(2):206. [
DOI:10.3390/ph18020206] [
PMID] [
PMCID]
59. Verstraeten S, Catteau L, Boukricha L, Quetin-Leclercq J, Mingeot-Leclercq MP. Effect of ursolic and oleanolic acids on lipid membranes: studies on MRSA and models of membranes. Antibiotics. 2021;10(11):1381. [
DOI:10.3390/antibiotics10111381] [
PMID] [
PMCID]
60. Liu Y, Huang Y, Fan C, Chi Z, Bai M, Sun L, et al. Ursolic acid targets glucosyltransferase and inhibits its activity to prevent Streptococcus mutans biofilm formation. Front Microbiol. 2021;12:743305. [
DOI:10.3389/fmicb.2021.743305] [
PMID] [
PMCID]